Contact
+49 711 685 67715
+49 711 685 63658
Email
Allmandring 3
70569 Stuttgart
Deutschland
Room: 1.041
2024
- Beyer, D., Torres, P. B., Pineda, S. P., Narambuena, C. F., Grad, J.-N., Košovan, P., & Blanco, P. M. (2024). pyMBE: The Python-based molecule builder for ESPResSo. The Journal of Chemical Physics, 161(2), Article 2. https://doi.org/10.1063/5.0216389
- Weeber, R., Grad, J.-N., Beyer, D., Blanco, P. M., Kreissl, P., Reinauer, A., Tischler, I., Košovan, P., & Holm, C. (2024). ESPResSo, a Versatile Open-Source Software Package for Simulating Soft Matter Systems. In M. Yáñez & R. J. Boyd (Eds.), Comprehensive Computational Chemistry (First Edition) (First Edition, pp. 578–601). Elsevier. https://doi.org/10.1016/B978-0-12-821978-2.00103-3
2023
- Weeber, R., Grad, J.-N., Beyer, D., Blanco, P. M., Kreissl, P., Reinauer, A., Tischler, I., Košovan, P., & Holm, C. (2023). ESPResSo, a Versatile Open-Source Software Package for Simulating Soft Matter Systems. In Reference Module in Chemistry, Molecular Sciences and Chemical Engineering. Elsevier. https://doi.org/10.1016/B978-0-12-821978-2.00103-3
- Sufi, S., Martinez-Ortiz, C., Doorn, P., Farrell, J., Barker, M., Katz, D. S., Jackson, A., Struck, A., Sandeman, A., Stewart, A., Terrel, A. R., Companjen, B., Haupt, C., Strasser, C., Goble, C., Chavez, C. V. F. G., Venters, C., Dietrich, D., Colón-Marrero, E., … Rampin, V. (2023). Report on the Workshop on Sustainable Software Sustainability 2021 (WoSSS21). Zenodo. https://doi.org/10.5281/zenodo.7951155
2022
- Rafieiolhosseini, N., Killa, M., Neumann, T., Tötsch, N., Grad, J.-N., Höing, A., Dirksmeyer, T., Niemeyer, J., Ottmann, C., Knauer, S. K., Giese, M., Voskuhl, J., & Hoffmann, D. (2022). Computational model predicts protein binding sites of a luminescent ligand equipped with guanidiniocarbonyl-pyrrole groups. Beilstein Journal of Organic Chemistry, 18, 1322--1331. https://doi.org/10.3762/bjoc.18.137
- Lamprecht, A.-L., Martinez-Ortiz, C., Barker, M., Bartholomew, S. L., Barton, J., Hong, N. C., Cohen, J., Druskat, S., Forest, J., Grad, J.-N., Katz, D. S., Richardson, R., Rosca, R., Schulte, D., Struck, A., & Weinzierl, M. (2022). What Do We (Not) Know About Research Software Engineering? Journal of Open Research Software, 10. https://doi.org/10.5334/jors.384
2021
- Anzt, H., Bach, F., Druskat, S., Löffler, F., Loewe, A., Renard, B. Y., Seemann, G., Struck, A., Achhammer, E., Aggarwal, P., Appel, F., Bader, M., Brusch, L., Busse, C., Chourdakis, G., Dabrowski, P. W., Ebert, P., Flemisch, B., Friedl, S., … Weeber, R. (2021). An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action. F1000Research, 9, 295. https://doi.org/10.12688/f1000research.23224.2
- Szuttor, K., Weik, F., Grad, J.-N., & Holm, C. (2021). Modeling the current modulation of bundled DNA structures in nanopores. The Journal of Chemical Physics, 154(5), Article 5. https://doi.org/10.1063/5.0038530
2020
- Flemisch, B., Hermann, S., Holm, C., Mehl, M., Reina, G., Uekermann, B., Boehringer, D., Ertl, T., Grad, J.-N., Iglezakis, D., Jaust, A., Koch, T., Seeland, A., Weeber, R., Weik, F., & Weishaupt, K. (2020). Umgang mit Forschungssoftware an der Universität Stuttgart. Universität Stuttgart. https://doi.org/10.18419/OPUS-11178
- ESPResSo Block course (WiSe 24/25)
- ESPResSo Block course (WiSe 23/24)
- ESPResSo Block course (WiSe 22/23)
- ESPResSo Block course (WiSe 21/22)
- ESPResSo Block course (WiSe 20/21)
As a co-organizer:
- Simulating soft matter across scales, October 7th-11th 2024, Institute for Computational Physics, University of Stuttgart, Germany, onsite event.
- Simulating energy materials with ESPResSo and waLBerla, October 9th-13th 2023, Institute for Computational Physics, University of Stuttgart, Germany, hybrid event.
- Simulating the dynamics of soft matter with ESPResSo, PyStencils and LbmPy, October 10th-14th 2022, Institute for Computational Physics, University of Stuttgart, Germany, hybrid event.
- Combining particle-based and continuum modelling in soft matter physics with ESPResSo, PyStencils, and LbmPy, October 11th-15th 2021, Institute for Computational Physics, University of Stuttgart, Germany, hybrid event.
- ESPResSo and Python: Versatile Tools for Soft Matter Research, October 5th-9th 2020, Institute for Computational Physics, University of Stuttgart, Germany, online event.
As an attendee:
- deRSE24 - 4th conference for Research Software Engineering in Germany, March 3rd-5th 2024, Julius-Maximilians-Universität Würzburg, Germany
- International Conference on Data-Integrated Simulation Science (SimTech2023), October 4th-6th 2023, University of Stuttgart, Germany.
- FAIR and TRUE Data Processing for Soft Matter Simulations, September 25th-27th 2023, Max Planck Institute for Polymer Research, Mainz, Germany.
- talk: Jean-Noël Grad, Simulation data management in ESPResSo (slides)
- un-deRSE23 – Unconference for Research Software Engineering in Germany, September 26th-28th, Dornburger Schlösser, Jena, Germany.
- deRSE23 – Conference for Research Software Engineering in Germany, February 20th-22nd 2023, Heinz Nixdorf Forum, Paderborn, Germany.
- talk: Jean-Noël Grad, Alexander Reinauer, Markus Holzer, Christian Holm, Rudolf Weeber, ESPResSo and LbmPy: Re-usable and modular interface between particle-based and lattice-based simulation codes, in: Session Integration vs. Modularity (slides)
- Day of Teaching and Learning, “University of Stuttgart beyond THE LÄND!”, November 30th 2022, Gießelmann, Wieprecht (organizers), University of Stuttgart, Germany.
- talk: Jean-Noël Grad, Rudolf Weeber, Christian Holm, Teaching soft matter physics to an international audience, in: Track 1 Courses taught in English (slides)
- Managing Research Software, September 15th-16th 2022, DINI/nestor workshop, University of Stuttgart, Germany (hybrid event).
- talk: Jean-Noël Grad, Alexander Reinauer, Rudolf Weeber, Christian Holm, Managing sustainable and community-driven research software in physics (slides, workshop program)
- Software Engineering (SE) '22, February 21th-25th 2022, Department of Computer Science, Humboldt University of Berlin, Germany (online event).
- talk: Jean-Noël Grad, Rudolf Weeber, Markus Holzer, Christian Holm, Making use of established codes instead of re-inventing the wheel: Using lattice-based methods from waLBerla into ESPResSo, in: Track rSE 22 (slides).
- WoSSS21 - Workshop on Sustainable Software Sustainability, October 6th-8th 2021, Online.
- notes published in Sufi et al. Report on the Workshop on Sustainable Software Sustainability 2021. Zenodo, 2023.
- What do we (not) know about RSE?, October 30th 2020, Lamprecht, Barker, Martinez (organizers), International Series of Online Research Software Events (SORSE).
- notes published in Lamprecht et al. What Do We (Not) Know About Research Software Engineering?. JORS, 2022.
- FAIR 4 Research Software, November 19th 2020, Lamprecht, Katz, Psomopoulos et al. (organizers), International Series of Online Research Software Events (SORSE).
- notes published in Gruenpeter et al. SORSE2020 outputs for the FAIR4RS workshop. Zenodo, 2020.
- Nachhaltigkeit von Forschungssoftware, November 7th-8th 2019, DFG-Rundgespräch, Loewe, Bach, Druskat, Renard, Seemann (organizers), Robert Koch-Institut, Berlin, Germany.
- notes published in Struck et al. A Guide for Publishing, Using, and Licensing Research Software in Germany, Zenodo, 2020.
- de-RSE Position 001 published in Anzt et al. An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action [version 2; peer review: 2 approved], F1000Research, 2021.
- Herausforderungen für die nachhaltige Entwicklung, Bereitstellung und Pflege von Forschungssoftware in Deutschland, June 5th 2019, Loewe, Katerbow, Seemann, Bach, Druskat (organizers), deRSE19, Albert Einstein Science Park, Potsdam, Germany.
- deRSE19 - Conference for Research Software Engineers in Germany, June 4th-6th 2019, Albert Einstein Science Park, Potsdam, Germany.
- poster: Jean-Noël Grad, Rudolf Weeber, Florian Weik, Kai Szuttor, Christian Holm, ESPResSo: Experiences in lowering the entry barrier for new developers in a particle-based simulation package (abstract)