Difference between revisions of "Hauptseminar Theorie und Simulation der weichen Materie WS 2013"

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:Blockseminar (Talks and Discussion)
 
:Blockseminar (Talks and Discussion)
 
;Date and Time
 
;Date and Time
:''to be discussed'' (~February 2014)
+
:Tuesday, 11.02.2014 and Wednesday, 12.02.2014
 
;Location
 
;Location
 
:Institut für Computerphysik, Seminar room 1.079
 
:Institut für Computerphysik, Seminar room 1.079
:Max-Planck-Institute for Intelligent Systems, Seminar room 5H7 [http://www.is.mpg.de/direction_stuttgart (directions)]
 
 
;Credit Points
 
;Credit Points
 
:2 SWS = 3 CP
 
:2 SWS = 3 CP
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:PO 2010: 28300 Fortgeschrittene Vielteilchentheorie (unbenoteter Leistungsnachweis als Prüfungsvorleistung)
 
:PO 2010: 28300 Fortgeschrittene Vielteilchentheorie (unbenoteter Leistungsnachweis als Prüfungsvorleistung)
 
;Language
 
;Language
:Englisch
+
:English
 
;Requirements
 
;Requirements
 
:We expect the participants to have fundamental knowledge in classical and statistical mechanics, thermodynamics, electrodynamics, and partial differential equations.
 
:We expect the participants to have fundamental knowledge in classical and statistical mechanics, thermodynamics, electrodynamics, and partial differential equations.
 +
 +
== Preliminary program ==
 +
Location: ICP Meeting room
 +
 +
'''Tuesday, 11.02.2014'''
 +
 +
*10:00 am: ''Theory of Liquids'' (Matthias Feldmaier) {{DownloadExt|/teaching/2013-ws-hauptseminar/feldmaier_theory_of_liquids.pdf|Handout}}
 +
*11:15 am: ''Introduction to Molecular Dynamics and Monte-Carlo Simulations'' (Patrick Kreissl) {{DownloadExt|/teaching/2013-ws-hauptseminar/handout_patrick.pdf|Handout}}
 +
*13:30 pm: ''Equilibrium Properties of Polymers'' (Clarissa Wink) {{DownloadExt|/teaching/2013-ws-hauptseminar/PolymerPhysics_2014_02_07.pdf|Handout}}
 +
*14:45 pm: ''Coarse-Grained Polymer Simulations'' (Katharina Zeuner) {{DownloadExt|/teaching/2013-ws-hauptseminar/Handout_07_02_2014.pdf|Handout}}
 +
 +
'''Wednesday, 12.02.2014'''
 +
 +
*10:30 am: ''Theory of Polymer Dynamics'' (Daniel Krüger) {{DownloadExt|/teaching/2013-ws-hauptseminar/Handout_PolyDyn_paper.pdf |Handout}}
 +
*11:45 am: ''Protein folding'' (Maren Jaeger) {{DownloadExt|/teaching/2013-ws-hauptseminar/maren_proteins.pdf|Handout}}
 +
*13:30 pm: ''Computing Electrostatic Interactions in Simulations'' (Tobias Rau) {{DownloadExt|/teaching/2013-ws-hauptseminar/handout_rau.pdf|Handout}}
  
 
== Topics ==
 
== Topics ==
  
'''This list is not final!'''
+
{| class="wikitable"
 +
 
 +
|-
 +
! Topic !! Speaker !! Tutor
 +
 
 +
|-
 +
| Theory of Liquids [[Hauptseminar Theorie und Simulation der weichen Materie SS 2013/Theory of Liquids|[SS 2013]]]
 +
| Matthias Feldmaier || Markus Bier
 +
 
 +
|-
 +
| Entropic Forces
 +
| ''NN'' || Matthias Krüger
 +
 
 +
|-
 +
| Equilibrium Properties of Polymers [[Hauptseminar Theorie und Simulation der weichen Materie SS 2013/Polymer_Theory|[SS 2013]]]
 +
| Clarissa Wink || Markus Bier
 +
 
 +
|-
 +
| Theory of Polymer Dynamics
 +
| Daniel Krüger || Matthias Krüger
 +
 
 +
|-
 +
| Introduction to Molecular Dynamics and Monte-Carlo Simulations (ICP) [[Hauptseminar_Theorie_und_Simulation_der_weichen_Materie_SS_2013/MD-MC|[SS 2013]]]
 +
| Patrick Kreissl || [[Joost de Graaf]]
 +
 
 +
|-
 +
| Coarse-Grained Polymer Simulations (ICP) [[Hauptseminar Theorie und Simulation der weichen Materie SS 2013/Polymer Simulations|[SS 2013]]]
 +
| Katharina Zeuner || [[Owen Hickey]]
 +
 
 +
|-
 +
| Polymer Translocation
 +
| ''NN'' || Matthias Krüger
 +
 
 +
|-
 +
| Computing Electrostatic Interactions in Simulations [[Hauptseminar Theorie und Simulation der weichen Materie SS 2013/Elektrostatics|[SS 2013]]]
 +
| Tobias Rau || [[Florian Weik]]
 +
 
 +
|-
 +
| The Poisson-Boltzmann Theory Cell Model for Charged Rods: Comparing Analytical Results and Simulation (ICP)
 +
| ''NN'' || [[Christian Holm]]
 +
 
 +
|-
 +
| Theory of Charged Polymers (Polyelectrolytes)
 +
| ''NN'' || [[Shervin Rafatnia]]
 +
 
 +
|-
 +
| Atomistic Simulations of Biopolymers
 +
| ''NN'' || [[Jens Smiatek]]
 +
 
 +
|-
 +
| Protein Folding
 +
| Maren Jäger || [[Jens Smiatek]]
  
General Topic: Polymers
+
|-
 +
| Ions at Interfaces
 +
| ''NN'' || Markus Bier
  
# Introduction to Molecular Dynamics and Monte-Carlo Simulations (ICP) [[Hauptseminar_Theorie_und_Simulation_der_weichen_Materie_SS_2013/MD-MC|[SS 2013]]]
+
|}
# Polymer Simulations (ICP) [[Hauptseminar Theorie und Simulation der weichen Materie SS 2013/Polymer Simulations|[SS 2013]]]
 
# Theory of Liquids (Markus Bier, MPI-IS) [[Hauptseminar Theorie und Simulation der weichen Materie SS 2013/Theory of Liquids|SS 2013]]
 
# Equilibrium Properties of Polymers (Markus Bier, MPI-IS) [[Hauptseminar Theorie und Simulation der weichen Materie SS 2013/Polymer_Theory|[SS 2013]]]
 
# Theory of Polymer Dynamics (Matthias Krüger, MPI-IS)
 
# Poisson-Boltzmann Theory: Comparing Analytical Results and Theory (ICP)
 
# Computing Electrostatic Interactions in Simulations (ICP) [[Hauptseminar Theorie und Simulation der weichen Materie SS 2013/Elektrostatics|[SS 2013]]]
 
# Atomistic Simulations of Biopolymers (ICP)
 
# Protein Folding (ICP)
 
# Entropic Forces (Matthias Krüger, MPI-IS)
 
# ''tba''
 
# ''tba''
 
  
 
== Getting the credit points ==
 
== Getting the credit points ==

Latest revision as of 09:35, 12 February 2014

Overview

Type
Blockseminar (Talks and Discussion)
Date and Time
Tuesday, 11.02.2014 and Wednesday, 12.02.2014
Location
Institut für Computerphysik, Seminar room 1.079
Credit Points
2 SWS = 3 CP
Teachers
Prof. Dr. Christian Holm (ICP)
Dr. Jens Smiatek (ICP)
Dr. Matthias Krüger (MPI für Intelligente Systeme)
Dr. Markus Bier (MPI für Intelligente Systeme)
Course Number
04570
Modules
PO 2011: 31620 Hauptseminar in Theoretischer Physik (benoteter Leistungsnachweis)
PO 2010: 28300 Fortgeschrittene Vielteilchentheorie (unbenoteter Leistungsnachweis als Prüfungsvorleistung)
Language
English
Requirements
We expect the participants to have fundamental knowledge in classical and statistical mechanics, thermodynamics, electrodynamics, and partial differential equations.

Preliminary program

Location: ICP Meeting room

Tuesday, 11.02.2014

  • 10:00 am: Theory of Liquids (Matthias Feldmaier) Handout (746 kB)
  • 11:15 am: Introduction to Molecular Dynamics and Monte-Carlo Simulations (Patrick Kreissl) Handout (273 kB)
  • 13:30 pm: Equilibrium Properties of Polymers (Clarissa Wink) Handout (2.12 MB)
  • 14:45 pm: Coarse-Grained Polymer Simulations (Katharina Zeuner) Handout (1.09 MB)

Wednesday, 12.02.2014

  • 10:30 am: Theory of Polymer Dynamics (Daniel Krüger) Handout (687 kB)
  • 11:45 am: Protein folding (Maren Jaeger) Handout (2.38 MB)
  • 13:30 pm: Computing Electrostatic Interactions in Simulations (Tobias Rau) Handout (361 kB)

Topics

Topic Speaker Tutor
Theory of Liquids [SS 2013] Matthias Feldmaier Markus Bier
Entropic Forces NN Matthias Krüger
Equilibrium Properties of Polymers [SS 2013] Clarissa Wink Markus Bier
Theory of Polymer Dynamics Daniel Krüger Matthias Krüger
Introduction to Molecular Dynamics and Monte-Carlo Simulations (ICP) [SS 2013] Patrick Kreissl Joost de Graaf
Coarse-Grained Polymer Simulations (ICP) [SS 2013] Katharina Zeuner Owen Hickey
Polymer Translocation NN Matthias Krüger
Computing Electrostatic Interactions in Simulations [SS 2013] Tobias Rau Florian Weik
The Poisson-Boltzmann Theory Cell Model for Charged Rods: Comparing Analytical Results and Simulation (ICP) NN Christian Holm
Theory of Charged Polymers (Polyelectrolytes) NN Shervin Rafatnia
Atomistic Simulations of Biopolymers NN Jens Smiatek
Protein Folding Maren Jäger Jens Smiatek
Ions at Interfaces NN Markus Bier

Getting the credit points

To get the credit points for the seminar, the following criteria should be met:

  • All participants have to be present in all talks and play a part in the discussions.
  • Instead of writing a report after the talk, we expect the participants to distribute a handout in the week before and send it to Jens to be put up on the web page.
    • The handout is to be written in English.
    • All participants are expected to read the handout as preparation to the talk.
    • It should describe the contents of the talk, written out in full.
    • It should have 5 to 10 pages.
    • If available, up to three original articles can be attached to the handout.
  • The talk is to be given at the arranged time.
    • The talk is to be held in English.
    • The talk should take 40 to 45 minutes.
    • We recommend to prepare electronic slides for the talk.
    • They can be displayed on your own laptop or on the institute's laptop. In the first case, please check whether the projection works before the actual date, in the latter case, please contact us well beforehand so that we will bring the laptop.
    • After the talk, there will be a discussion on the talk, where all participants are expected to actively contribute.
    • After the discussion, we will give hints on how to improve the presentation.
  • For the participants that require a grade (PO 2011), the following aspects will be important:
    • Quality of the talk (contents, presentation, slides)
    • Quality of the handout (contents, readability)
    • Contributions to the discussion